Index

A

add_argparse_args() (in module orthomap.eggnog2orthomap) (in module orthomap.gtf2t2g) (in module orthomap.ncbitax) (in module orthomap.of2orthomap) (in module orthomap.qlin)

add_gene_age2adata_var() (in module orthomap.orthomap2tei)

C

cazet22() (in module orthomap.datasets)

cazet22_orthomap() (in module orthomap.datasets)

D

define_parser() (in module orthomap.eggnog2orthomap) (in module orthomap.gtf2t2g) (in module orthomap.ncbitax) (in module orthomap.of2orthomap) (in module orthomap.qlin)

E

ensembl105() (in module orthomap.datasets)

ensembl110_last() (in module orthomap.datasets)

G

geneset_overlap() (in module orthomap.orthomap2tei) get_bins() (in module orthomap.orthomap2tei) get_continuity_score() (in module orthomap.of2orthomap) get_counts_per_ps() (in module orthomap.of2orthomap) get_e50() (in module orthomap.orthomap2tei) get_eggnog_orthomap() (in module orthomap.eggnog2orthomap) get_ematrix() (in module orthomap.orthomap2tei) get_geneset_overlap() (in module orthomap.orthomap2tei) get_lineage_topo() (in module orthomap.qlin)

get_oldest_common() (in module orthomap.qlin) get_orthomap() (in module orthomap.of2orthomap) get_pmatrix() (in module orthomap.orthomap2tei) get_pstrata() (in module orthomap.orthomap2tei) get_qlin() (in module orthomap.qlin) get_rematrix() (in module orthomap.orthomap2tei) get_tei() (in module orthomap.orthomap2tei) get_youngest_common() (in module orthomap.qlin) get_youngest_common_counts() (in module orthomap.of2orthomap)

M

ma21_fst() (in module orthomap.datasets) main() (in module orthomap.eggnog2orthomap) (in module orthomap.gtf2t2g) (in module orthomap.ncbitax) (in module orthomap.of2orthomap) (in module orthomap.qlin) mergeby_from_counts() (in module orthomap.orthomap2tei) mergeby_from_dataframe() (in module orthomap.orthomap2tei) module orthomap.datasets orthomap.eggnog2orthomap orthomap.gtf2t2g orthomap.ncbitax orthomap.of2orthomap orthomap.orthomap2tei orthomap.qlin

mouse_ensembl105_gtf() (in module orthomap.datasets) mouse_ensembl110_gtf() (in module orthomap.datasets) mouse_synonyms() (in module orthomap.datasets) mytai_example() (in module orthomap.datasets)

O

orthomap.datasets module orthomap.eggnog2orthomap module orthomap.gtf2t2g module orthomap.ncbitax module

orthomap.of2orthomap module orthomap.orthomap2tei module orthomap.qlin module

P

packer19() (in module orthomap.datasets)

packer19_small() (in module orthomap.datasets) parse_gtf() (in module orthomap.gtf2t2g)

Q

qiu22_frog() (in module orthomap.datasets)

qiu22_mouse() (in module orthomap.datasets) qiu22_zebrafish() (in module orthomap.datasets)

R

read_orthomap() (in module orthomap.orthomap2tei)

replace_by() (in module orthomap.orthomap2tei)

S

sun21_orthomap() (in module orthomap.datasets)

U

update_ncbi() (in module orthomap.ncbitax)

W

ws288() (in module orthomap.datasets)

Z

zebrafish_ensembl105_gtf() (in module orthomap.datasets) zebrafish_ensembl105_orthomap() (in module orthomap.datasets)

zebrafish_ensembl110_gtf() (in module orthomap.datasets) zebrafish_ensembl110_orthomap() (in module orthomap.datasets)